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Wikipedia
When Baiken was young, the gears attacked the Japanese Institute she was living in at the time. During that attack she lost her mother, her father, and her right arm and left eye. Amidst the flames she could see a man, the creator of the gears, and swore revenge on him (and presumably the gears as well) for what he had done.
Baiken was heavily inspired by Himura Kenshin, to the point where her initial physical appearance in the first game was a pallette swap of Kenshin. It is said that Daisuke Ishiwatari (the character designer) got the idea when he saw a picture of Kenshin and mistook him for a woman
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