Everyone's priority at the moment seems to be the Heart, and the Order apparently had no more of an idea of who that was than the Noah did. I doubt they'd go after Komui specifically for information, but I don't see why they wouldn't use him as much as possible before killing him if he was in their hands - sort of like using the Science guys for Skulls. It wasn't what they came there for, but why waste good bodies?Well, thats true. I wonder if Earl does care about Order at all, he didn't seem to be too concerned before, all that interest him are Linalee, Innocence and Cross+Allen. And he can always use Lulu with her transformation ability as the spy. it will be way more efective then torturing Komui for information.
What's that...?Well, pretty much so. And in the end we have Eureka 7-like scene.